Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0758225.1c.12a with 10 members (myosin binding protein)

Chordata / Vertebrata / Gnathostomata / Euteleostomi / Neopterygii / Teleostei / Clupeocephala /

... /

Euteleosteomorpha / Acanthomorphata / Percomorphaceae / Ovalentaria /

Atherinomorphae /

Completeness score: 1.00

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This HOG has 31 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0758225.1c.13a.9b	621	64	myosin binding protein
2	HOG:E0758225.1c.12a	300	42	myosin binding protein
3	HOG:E0758225.1c.13a	210	91	myosin binding protein
4	HOG:E0758225	20	516	myosin binding protein
5	HOG:E0775603	10	3	-
6	HOG:E0758225.1c.13b	10	1	myosin binding protein
7	HOG:E0758225.1c.13a.8b	10	1	myosin binding protein
8	HOG:E0758225.1c.13a.8a	10	1	myosin binding protein
9	HOG:E0758225.1c.13a.7b	10	1	myosin binding protein
10	HOG:E0758225.1c.13a.7a	10	1	myosin binding protein
11	HOG:E0758225.1c.12a.1b	10	1	myosin binding protein
12	HOG:E0758225.1c.12a.1a	10	1	myosin binding protein
13	HOG:E0758225.1c.11b	10	1	myosin binding protein
14	HOG:E0758225.1c.11a	10	1	myosin binding protein
15	HOG:E0758225.1c	10	183	myosin binding protein
16	HOG:E0755928	5	24	Uncharacterized protein
17	HOG:E0779447.1e.4b.4h	4	54	Down syndrome cell adhesion
18	HOG:E0657100.2c	3	1	-
19	HOG:E0519300.5a	3	2	Derived by automated computational analysis using gene prediction method
20	HOG:E0519300.4d	3	1	Derived by automated computational analysis using gene prediction method
21	HOG:E0755631.1b	2	1	Myosin light chain kinase smooth muscle-like
22	HOG:E0648707.1a	2	1	Immunoglobulin I-set domain protein
23	HOG:E0779398	1	3	-
24	HOG:E0766211.1a	1	3	Derived by automated computational analysis using gene prediction method Gnomon
25	HOG:E0755631.1a	1	2	Myosin light chain kinase smooth muscle-like

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